PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G107700.1
Common NameB456_008G107700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 245aa    MW: 27058.4 Da    PI: 8.6999
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G107700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1868118155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr ++ +g+Wv+eIr p++   + r++lg++ tae+Aa+a++ a+++++g
  Gorai.008G107700.1  68 PVYRGVRMRS-WGKWVSEIRQPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 118
                         68*****998.**********854...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-1368118IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2169127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-3269127IPR001471AP2/ERF domain
PROSITE profilePS5103222.81369126IPR001471AP2/ERF domain
SMARTSM003805.8E-3769132IPR001471AP2/ERF domain
PRINTSPR003671.9E-107081IPR001471AP2/ERF domain
CDDcd000181.61E-3270128No hitNo description
PRINTSPR003671.9E-1092108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MERDIDIEND AHYNNPLTSC SVISTTTTVA TSITFSVSGP KQNKKTSKNS VAIKGSKKAV  60
GDLERKQPVY RGVRMRSWGK WVSEIRQPKK KSRIWLGTYP TAEMAARAHD VAALAIKGCS  120
AHLNFPELAK TLPRPASTSP KEIQAAASQA AASTYLDTSR WSNNIEPEDK VSRRPRQEQV  180
PVSRSDNMCS TSPFEDDAAL FDLPDLTIDA INRSDGFCSY SSTWQVCAVD AGFRIEEPFA  240
REYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1470126360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-1470126663ATERF1
3gcc_A1e-1470126663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5814772e-65JX581477.1 Gossypium hirsutum clone NBRI_GE14121 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437526.10.0PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ77e-64ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0D2T4270.0A0A0D2T427_G
STRINGPOPTR_0014s05500.17e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-59ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]